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  • Top cofit genes for GFF325 from Variovorax sp. SCN45

    Nucleoside ABC transporter, substrate-binding protein
    SEED: Nucleoside ABC transporter, periplasmic nucleoside-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF768 Trehalose synthase (EC 5.4.99.16) no 0.69
    2 GFF6138 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6 no 0.61
    3 GFF1561 Aldehyde dehydrogenase (EC 1.2.1.3) no 0.57
    4 GFF5968 no description no 0.57
    5 GFF6335 no description no 0.56
    6 GFF6923 Acetate permease ActP (cation/acetate symporter) no 0.56
    7 GFF5401 2-keto-3-deoxy-L-fuconate dehydrogenase no 0.54
    8 GFF429 RND efflux system, inner membrane transporter no 0.53
    9 GFF6927 Transcriptional regulator, ArsR family no 0.51
    10 GFF5728 Methyl-accepting chemotaxis sensor/transducer protein no 0.50
    11 GFF7241 no description no 0.50
    12 GFF4194 L-carnitine dehydratase/bile acid-inducible protein F no 0.50
    13 GFF4365 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) no 0.50
    14 GFF3806 Putative ring-cleaving dioxygenase no 0.50
    15 GFF1184 UPF0060 membrane protein YnfA no 0.50
    16 GFF5377 Transcriptional regulator, AcrR family no 0.50
    17 GFF4307 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.48
    18 GFF1301 Peptide deformylase (EC 3.5.1.88) no 0.48
    19 GFF6910 Xanthine permease no 0.48
    20 GFF6549 no description no 0.47

    Or look for negative cofitness