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  • Top cofit genes for GFF319 from Variovorax sp. SCN45

    EXTRACYTOPLASMIC FUNCTION ALTERNATIVE SIGMA FACTOR

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6324 Kup system potassium uptake protein no 0.57
    2 GFF523 Tripartite tricarboxylate transporter TctA family no 0.56
    3 GFF2390 no description no 0.51
    4 GFF7222 Coenzyme F390 synthetase no 0.50
    5 GFF5035 Opine oxidase subunit A no 0.50
    6 GFF5610 hypothetical protein no 0.49
    7 GFF1505 Cytosolic acyl coenzyme A thioester hydrolase, inducible (EC 3.1.2.2) no 0.48
    8 GFF212 Ribosome association toxin RatA no 0.48
    9 GFF6413 Histidine ABC transporter, substrate-binding protein no 0.48
    10 GFF3770 hypothetical protein no 0.48
    11 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) no 0.48
    12 GFF549 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) no 0.47
    13 GFF7310 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA no 0.47
    14 GFF232 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) no 0.47
    15 GFF5429 Iron(III) dicitrate transport protein FecA no 0.47
    16 GFF156 Glycosyl transferase, group 2 family no 0.47
    17 GFF237 ABC-type branched-chain amino acid transport systems, periplasmic component 0.61 0.47
    18 GFF240 Cytosol aminopeptidase PepA (EC 3.4.11.1) no 0.46
    19 GFF178 Mannonate dehydratase (EC 4.2.1.8) 0.16 0.46
    20 GFF1862 Adenosine deaminase (EC 3.5.4.4) no 0.46

    Or look for negative cofitness