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Cofit
Protein
Homologs
Top cofit genes for GFF319 from
Variovorax sp. SCN45
EXTRACYTOPLASMIC FUNCTION ALTERNATIVE SIGMA FACTOR
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF6324
Kup system potassium uptake protein
no
0.57
2
GFF523
Tripartite tricarboxylate transporter TctA family
no
0.56
3
GFF2390
no description
no
0.51
4
GFF7222
Coenzyme F390 synthetase
no
0.50
5
GFF5035
Opine oxidase subunit A
no
0.50
6
GFF5610
hypothetical protein
no
0.49
7
GFF1505
Cytosolic acyl coenzyme A thioester hydrolase, inducible (EC 3.1.2.2)
no
0.48
8
GFF212
Ribosome association toxin RatA
0.57
0.48
9
GFF6413
Histidine ABC transporter, substrate-binding protein
no
0.48
10
GFF3770
hypothetical protein
no
0.48
11
GFF4000
ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12)
no
0.48
12
GFF549
DNA-3-methyladenine glycosylase II (EC 3.2.2.21)
no
0.47
13
GFF7310
tRNA-(cytosine32)-2-thiocytidine synthetase TtcA
no
0.47
14
GFF232
Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18)
no
0.47
15
GFF5429
Iron(III) dicitrate transport protein FecA
no
0.47
16
GFF156
Glycosyl transferase, group 2 family
no
0.47
17
GFF237
ABC-type branched-chain amino acid transport systems, periplasmic component
0.61
0.47
18
GFF240
Cytosol aminopeptidase PepA (EC 3.4.11.1)
0.35
0.46
19
GFF178
Mannonate dehydratase (EC 4.2.1.8)
0.16
0.46
20
GFF1862
Adenosine deaminase (EC 3.5.4.4)
no
0.46
Or look for
negative cofitness