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  • Top cofit genes for PS417_16255 from Pseudomonas simiae WCS417

    RNA polymerase sigma factor
    SEED: FIG006045: Sigma factor, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_15220 alkane 1-monooxygenase no 0.23
    2 PS417_26385 amino acid ABC transporter substrate-binding protein no 0.23
    3 PS417_17340 GNAT family acetyltransferase no 0.22
    4 PS417_22325 amino acid APC transporter no 0.22
    5 PS417_16860 diadenosine tetraphosphate hydrolase no 0.21
    6 PS417_16295 hypothetical protein no 0.21
    7 PS417_24320 large-conductance mechanosensitive channel no 0.21
    8 PS417_11280 HxcX atypical pseudopilin no 0.20
    9 PS417_23855 ABC transporter substrate-binding protein no 0.20
    10 PS417_05255 hypothetical protein no 0.20
    11 PS417_04765 membrane protein no 0.20
    12 PS417_28250 cell wall assembly protein no 0.20
    13 PS417_04770 LysR family transcriptional regulator no 0.20
    14 PS417_21995 hypothetical protein no 0.20
    15 PS417_11935 ABC transporter substrate-binding protein no 0.19
    16 PS417_01750 histidine ammonia-lyase no 0.19
    17 PS417_20510 membrane protein no 0.19
    18 PS417_20470 hypothetical protein no 0.19
    19 PS417_21310 AraC family transcriptional regulator no 0.19
    20 PS417_12760 histidine kinase no 0.19

    Or look for negative cofitness