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  • Top cofit genes for GFF3160 from Hydrogenophaga sp. GW460-11-11-14-LB1

    IncF plasmid conjugative transfer protein TraD
    SEED: IncF plasmid conjugative transfer protein TraD
    KEGG: conjugal transfer pilus assembly protein TraD

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4926 Alpha/beta hydrolase fold no 0.61
    2 GFF1263 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) no 0.60
    3 GFF5493 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) no 0.59
    4 GFF3527 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) no 0.59
    5 GFF664 FIG00932412: hypothetical protein no 0.59
    6 GFF24 Hydroxymethylpyrimidine ABC transporter, transmembrane component no 0.58
    7 GFF2610 Patatin no 0.57
    8 GFF595 two component, sigma54 specific, transcriptional regulator, Fis family no 0.56
    9 GFF2783 Sensor histidine kinase no 0.55
    10 GFF1204 Regulatory protein of benzoate catabolism no 0.55
    11 GFF5550 hypothetical protein no 0.55
    12 GFF1544 Transcriptional regulatory protein no 0.55
    13 GFF803 PQQ-dependent oxidoreductase, gdhB family no 0.54
    14 GFF915 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.54
    15 GFF2715 rRNA small subunit methyltransferase I no 0.54
    16 GFF1809 Probable transmembrane protein no 0.54
    17 GFF2575 Branched-chain amino acid transport protein AzlC 0.33 0.53
    18 GFF1011 Transcriptional regulator, IclR family no 0.53
    19 GFF5731 3'-to-5' oligoribonuclease (orn) no 0.53
    20 GFF1068 hypothetical protein no 0.53

    Or look for negative cofitness