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  • Top cofit genes for GFF3138 from Variovorax sp. SCN45

    VgrG protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6114 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) no 0.52
    2 GFF5766 Chemotaxis protein CheD no 0.51
    3 GFF7257 KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor no 0.50
    4 GFF1365 no description no 0.49
    5 GFF2850 hypothetical protein no 0.48
    6 GFF3241 hypothetical protein no 0.48
    7 GFF3723 Cytochrome c5 no 0.47
    8 GFF2851 Phosphoglycerate mutase family protein no 0.47
    9 GFF7192 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.47
    10 GFF5310 Cytochrome c4 no 0.46
    11 GFF4667 hypothetical protein no 0.45
    12 GFF1115 Putative transmembrane protein no 0.45
    13 GFF6544 D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) no 0.45
    14 GFF796 Transcriptional activator MetR no 0.45
    15 GFF3838 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) no 0.45
    16 GFF1969 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.45
    17 GFF4505 hypothetical protein no 0.43
    18 GFF2543 Uncharacterized membrane protein Bcep18194_A6058 no 0.43
    19 GFF3494 hypothetical protein no 0.43
    20 GFF2999 Putative transmembrane protein no 0.43

    Or look for negative cofitness