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  • Top cofit genes for PS417_15935 from Pseudomonas simiae WCS417

    Rrf2 family transcriptional regulator
    SEED: Rrf2 family transcriptional regulator, group III

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_13835 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) 0.25 0.40
    2 PS417_23730 LysR family transcriptional regulator no 0.40
    3 PS417_17560 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) 0.28 0.39
    4 PS417_13840 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) no 0.37
    5 PS417_12665 hypothetical protein no 0.34
    6 PS417_17565 branched-chain amino acid aminotransferase no 0.33
    7 PS417_20580 isocitrate dehydrogenase no 0.33
    8 PS417_25705 lipoate--protein ligase no 0.33
    9 PS417_23690 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) no 0.31
    10 PS417_17545 2-oxoisovalerate dehydrogenase 0.21 0.30
    11 PS417_21065 3-methylitaconate isomerase no 0.30
    12 PS417_01180 ribosomal protein S6 modification protein no 0.29
    13 PS417_17550 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) 0.23 0.29
    14 PS417_27210 AsnC family transcriptional regulator 0.20 0.28
    15 PS417_21070 aconitate hydratase 0.16 0.28
    16 PS417_21275 GntR family transcriptional regulator 0.28 0.28
    17 PS417_10535 hypothetical protein no 0.27
    18 PS417_27835 endoribonuclease no 0.26
    19 PS417_05440 chemotaxis protein CheY no 0.26
    20 PS417_18590 SAM-dependent methyltransferase no 0.26

    Or look for negative cofitness