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  • Top cofit genes for GFF3109 from Variovorax sp. SCN45

    Methionine ABC transporter substrate-binding protein
    SEED: Methionine ABC transporter substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1015 ABC-type antimicrobial peptide transport system, ATPase component no 0.59
    2 GFF6980 Mobile element protein no 0.58
    3 GFF3354 FIG00537998: hypothetical protein no 0.55
    4 GFF941 Transporter, LysE family no 0.55
    5 GFF5721 Flagellar L-ring protein FlgH no 0.55
    6 GFF2809 Putative transcription regulator no 0.53
    7 GFF3974 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.53
    8 GFF6323 Benzoate transport protein no 0.52
    9 GFF216 Transmembrane regulator protein PrtR no 0.52
    10 GFF1918 hypothetical protein no 0.52
    11 GFF7249 no description no 0.51
    12 GFF6990 hypothetical protein no 0.51
    13 GFF7242 hypothetical protein no 0.49
    14 GFF1281 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.49
    15 GFF2069 Cobalt-zinc-cadmium resistance protein no 0.49
    16 GFF6161 Hydroxymethylpyrimidine ABC transporter, ATPase component no 0.49
    17 GFF1092 Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1) no 0.49
    18 GFF1348 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.49
    19 GFF1588 Serine phosphatase RsbU, regulator of sigma subunit no 0.48
    20 GFF6903 Transcriptional regulator, LysR family no 0.48

    Or look for negative cofitness