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  • Top cofit genes for GFF3108 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF7178 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) no 0.47
    2 GFF4943 Chloride channel protein no 0.46
    3 GFF712 ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) no 0.46
    4 GFF6114 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) no 0.46
    5 GFF3329 Terpene utilization protein AtuA 0.42 0.44
    6 GFF2099 Acyl-CoA dehydrogenase no 0.42
    7 GFF1916 YpfJ protein, zinc metalloprotease superfamily no 0.42
    8 GFF1588 Serine phosphatase RsbU, regulator of sigma subunit no 0.42
    9 GFF3117 Beta-phosphoglucomutase (EC 5.4.2.6) no 0.41
    10 GFF4985 Tricarboxylate transport protein TctC no 0.41
    11 GFF3422 Lipoprotein-related protein no 0.40
    12 GFF3302 no description no 0.40
    13 GFF1398 Transcriptional regulator, LacI family no 0.40
    14 GFF1087 Thioredoxin reductase (EC 1.8.1.9) no 0.40
    15 GFF2561 FIG00931134: hypothetical protein no 0.40
    16 GFF5536 no description no 0.39
    17 GFF878 COGs COG2343 no 0.39
    18 GFF4287 Acyl-CoA dehydrogenase no 0.38
    19 GFF5084 FIG00933367: hypothetical protein no 0.38
    20 GFF4172 no description no 0.38

    Or look for negative cofitness