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  • Top cofit genes for PS417_15890 from Pseudomonas simiae WCS417

    RNA polymerase sigma factor
    SEED: RNA polymerase sigma-70 factor, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_01645 cupin no 0.24
    2 PS417_11810 oxidoreductase no 0.20
    3 PS417_16000 chemotaxis protein CheY no 0.20
    4 PS417_08285 ATPase no 0.18
    5 PS417_16200 sulfonate ABC transporter substrate-binding protein no 0.18
    6 PS417_07690 hypothetical protein no 0.18
    7 PS417_25905 AsnC family transcriptional regulator no 0.18
    8 PS417_14760 membrane protein no 0.18
    9 PS417_06755 porin no 0.18
    10 PS417_15585 DNA repair nucleotidyltransferase 0.34 0.17
    11 PS417_20335 hypothetical protein no 0.17
    12 PS417_12775 GntR family transcriptional regulator 0.57 0.17
    13 PS417_26055 cyclic nucleotide-binding protein no 0.17
    14 PS417_23225 hypothetical protein 0.10 0.17
    15 PS417_06605 leucine/isoleucine/valine transporter permease subunit no 0.17
    16 PS417_12970 FMN-dependent NADH-azoreductase no 0.17
    17 PS417_17050 transcriptional regulator no 0.16
    18 PS417_22620 pyruvate kinase no 0.16
    19 PS417_14735 Nitrate reductase (EC 1.7.99.4) (from data) no 0.16
    20 PS417_06675 ATP-dependent helicase no 0.16

    Or look for negative cofitness