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Gene
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Cofit
Protein
Homologs
Top cofit genes for GFF3103 from
Variovorax sp. SCN45
Cys-tRNA(Pro) deacylase YbaK
SEED: Transcriptional regulator
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF4192
no description
no
0.60
2
GFF706
hypothetical protein
no
0.58
3
GFF5127
no description
no
0.57
4
GFF4614
Transcriptional regulator, AraC family
0.29
0.57
5
GFF2761
Glutamine ABC transporter, permease protein GlnP
no
0.56
6
GFF1678
Transcriptional regulator, GntR family
no
0.56
7
GFF1971
Creatinine amidohydrolase (EC 3.5.2.10)
no
0.56
8
GFF4602
2-hydroxychromene-2-carboxylate isomerase family protein
0.44
0.55
9
GFF3173
Transcriptional regulator, IclR family
no
0.55
10
GFF3228
hypothetical protein
no
0.55
11
GFF4499
Uncharacterized DUF1427 protein PA2697
no
0.54
12
GFF5444
FIG005080: Possible exported protein
no
0.53
13
GFF4324
no description
no
0.53
14
GFF3052
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)
no
0.52
15
GFF1567
Demethylmenaquinone methyltransferase-like protein
no
0.52
16
GFF4484
ATP-dependent protease subunit HslV (EC 3.4.25.2)
no
0.52
17
GFF4550
NAD(FAD)-utilizing dehydrogenase, sll0175 homolog
0.18
0.52
18
GFF7028
Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC
no
0.52
19
GFF3058
Demethylmenaquinone methyltransferase-like protein
no
0.52
20
GFF3373
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34)
0.27
0.51
Or look for
negative cofitness