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  • Top cofit genes for GFF3101 from Variovorax sp. SCN45

    RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein
    SEED: RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2718 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) no 0.57
    2 GFF1683 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) no 0.57
    3 GFF3676 Outer membrane protein romA no 0.55
    4 GFF1585 Outer membrane porin protein 32 precursor no 0.52
    5 GFF6432 no description no 0.52
    6 GFF1904 Uncharacterized MFS-type transporter no 0.52
    7 GFF6480 hypothetical protein no 0.52
    8 GFF2397 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.52
    9 GFF4228 2-hydroxychromene-2-carboxylate isomerase no 0.51
    10 GFF2947 3'-5' exonuclease no 0.51
    11 GFF4895 FIG074102: hypothetical protein no 0.51
    12 GFF3376 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.51
    13 GFF3678 D-alanine aminotransferase (EC 2.6.1.21) no 0.51
    14 GFF3518 no description no 0.50
    15 GFF5108 FIG00348319: hypothetical protein no 0.50
    16 GFF3921 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) no 0.49
    17 GFF6546 hypothetical protein no 0.49
    18 GFF3525 Protein tyrosine/serine phosphatase no 0.48
    19 GFF4458 hypothetical protein no 0.48
    20 GFF4280 oxidoreductase FAD/NAD(P)-binding domain protein no 0.48

    Or look for negative cofitness