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Cofit
Protein
Homologs
Top cofit genes for GFF3075 from
Variovorax sp. SCN45
Surface antigen
SEED: Surface antigen
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF4632
Glycosyl transferase, family 2
no
0.59
2
GFF5007
probable membrane protein STY4873
no
0.59
3
GFF5926
FIG00957260: hypothetical protein
no
0.58
4
GFF924
hypothetical protein
no
0.57
5
GFF4814
Conserved hypothetical protein potentially related to ribose or hydroxymethylpyrimidine metabolism
no
0.56
6
GFF1126
Metal transporter, ZIP family
no
0.56
7
GFF424
Cobalamin synthase (EC 2.7.8.26)
no
0.55
8
GFF7266
L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16)
no
0.55
9
GFF4085
Transcriptional regulator, LysR family
no
0.55
10
GFF3263
Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family
no
0.54
11
GFF1474
Transcriptional regulator, LysR family
no
0.54
12
GFF1788
hypothetical protein
no
0.54
13
GFF157
Methyltransferase type 12
no
0.53
14
GFF1332
no description
no
0.53
15
GFF4187
hypothetical protein
no
0.52
16
GFF6195
ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines)
no
0.52
17
GFF6198
D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83)
no
0.52
18
GFF6085
Transcriptional regulator, AcrR family
no
0.52
19
GFF2905
surface antigen gene
no
0.52
20
GFF1750
BUG/TctC family periplasmic protein
no
0.52
Or look for
negative cofitness