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  • Top cofit genes for GFF3050 from Variovorax sp. SCN45

    Lactam utilization protein LamB
    SEED: Lactam utilization protein LamB
    KEGG: UPF0271 protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5276 D-arabinitol 4-dehydrogenase (EC 1.1.1.11) no 0.71
    2 GFF5617 Coenzyme A ligase no 0.63
    3 GFF6780 Energy-dependent translational throttle protein EttA no 0.60
    4 GFF211 protein of unknown function UPF0125 no 0.60
    5 GFF3019 hypothetical protein no 0.60
    6 GFF6731 Nucleoside ABC transporter, permease protein 1 no 0.60
    7 GFF2859 Excinuclease ABC subunit C 0.52 0.59
    8 GFF2913 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.58
    9 GFF730 Class A beta-lactamase (EC 3.5.2.6) no 0.57
    10 GFF2111 Permease of the drug/metabolite transporter (DMT) superfamily no 0.57
    11 GFF4768 Transcriptional regulator, MarR family no 0.56
    12 GFF1155 Putative transmembrane protein no 0.56
    13 GFF1364 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.56
    14 GFF4653 Cytochrome c peroxidase (EC 1.11.1.5) no 0.56
    15 GFF2650 hypothetical protein no 0.55
    16 GFF3231 hypothetical protein no 0.55
    17 GFF4977 Transcriptional regulator for ferulate or vanillate catabolism no 0.55
    18 GFF784 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.55
    19 GFF5942 hypothetical protein no 0.55
    20 GFF1962 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) no 0.54

    Or look for negative cofitness