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  • Top cofit genes for GFF3033 from Sphingobium sp. HT1-2

    RNA polymerase, sigma-24 subunit, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4680 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.91
    2 GFF326 hypothetical protein no 0.89
    3 GFF4546 hypothetical protein no 0.89
    4 GFF3657 hypothetical protein no 0.88
    5 GFF891 hypothetical protein no 0.87
    6 GFF2024 Rhamnogalacturonan endolyase (EC 4.2.2.23) no 0.86
    7 GFF4999 hypothetical protein no 0.85
    8 GFF1704 hypothetical protein no 0.85
    9 GFF2031 hypothetical protein no 0.84
    10 GFF2985 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) 0.44 0.84
    11 GFF5094 Type IV secretory pathway, VirD2 components (relaxase) no 0.84
    12 GFF5338 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.2.8) no 0.83
    13 GFF2035 Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) no 0.83
    14 GFF3636 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.83
    15 GFF1128 hypothetical protein no 0.83
    16 GFF3505 ABC transporter, fused permease protein no 0.83
    17 GFF1696 Excinuclease ABC subunit A no 0.82
    18 GFF1033 Tetrapartite efflux system, inner membrane component FusBC-like no 0.82
    19 GFF484 Predicted carboxypeptidase 0.11 0.82
    20 GFF5052 Pirin no 0.82

    Or look for negative cofitness