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  • Top cofit genes for GFF3022 from Sphingobium sp. HT1-2

    Transcriptional regulator, LysR family
    SEED: LysR family transcriptional regulator YnfL

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4334 Cytochrome c oxidase (cbb3-type) subunit CcoP (EC 1.9.3.1) 0.22 0.81
    2 GFF2978 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.74
    3 GFF620 DNA topoisomerase IB (poxvirus type) (EC 5.99.1.2) no 0.68
    4 GFF1913 ATP-dependent helicase HrpB 0.38 0.65
    5 GFF934 hypothetical protein no 0.65
    6 GFF4926 hypothetical protein no 0.65
    7 GFF2226 beta-galactosidase (EC 3.2.1.23) no 0.64
    8 GFF4312 Thiol:disulfide involved in conjugative transfer no 0.64
    9 GFF4339 hypothetical protein no 0.62
    10 GFF2227 D-mannonate oxidoreductase (EC 1.1.1.57) 0.68 0.62
    11 GFF1380 Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007) no 0.62
    12 GFF4214 Transposase, mutator type no 0.60
    13 GFF4471 Transcriptional regulator, MerR family no 0.60
    14 GFF3646 symbiosis island integrase no 0.60
    15 GFF725 hypothetical protein no 0.60
    16 GFF1168 hypothetical protein no 0.59
    17 GFF2971 hypothetical protein no 0.59
    18 GFF172 Glutathione S-transferase (EC 2.5.1.18) 0.28 0.59
    19 GFF608 hypothetical protein no 0.58
    20 GFF1043 hypothetical protein no 0.58

    Or look for negative cofitness