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  • Top cofit genes for GFF3011 from Variovorax sp. SCN45

    T6SS component TssB (ImpB/VipA)
    SEED: Uncharacterized protein ImpB
    KEGG: type VI secretion system protein ImpB

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF730 Class A beta-lactamase (EC 3.5.2.6) 0.42 0.50
    2 GFF7328 no description no 0.49
    3 GFF5703 pyridoxal-phosphate dependent enzyme family protein no 0.47
    4 GFF756 no description no 0.45
    5 GFF6089 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) no 0.44
    6 GFF3762 hypothetical protein no 0.44
    7 GFF1609 2-haloalkanoic acid dehalogenase (EC 3.8.1.2) no 0.44
    8 GFF412 Transcription-repair coupling factor no 0.44
    9 GFF1408 hypothetical protein no 0.44
    10 GFF3100 Aspartyl protease no 0.43
    11 GFF7121 CDP-6-deoxy-delta-3,4-glucoseen reductase-like no 0.43
    12 GFF5621 ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.42
    13 GFF5758 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB no 0.41
    14 GFF6375 Uncharacterized aldehyde oxidase, molybdopterin-binding subunit 0.41 0.41
    15 GFF3062 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.40
    16 GFF3967 Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8) no 0.40
    17 GFF3371 FIG00456413: hypothetical protein no 0.40
    18 GFF3199 Ser/Thr protein phosphatase family protein no 0.39
    19 GFF5945 Membrane-bound lytic murein transglycosylase A no 0.39
    20 GFF2441 RND efflux system, inner membrane transporter no 0.39

    Or look for negative cofitness