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  • Top cofit genes for PS417_15355 from Pseudomonas simiae WCS417

    sigma factor sigB regulation protein rsbQ
    SEED: Hydrolase of unknown specificity RsbQ, part of a novel [RsbQ - PAS domain] bacterial sensing module

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_13635 D-ribose transporter ATP-binding protein no 0.23
    2 PS417_17510 histidine kinase no 0.23
    3 PS417_17515 GfdT protein no 0.23
    4 PS417_19405 hypothetical protein no 0.22
    5 PS417_09585 acetyltransferase no 0.22
    6 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase no 0.21
    7 PS417_11425 transcriptional regulator no 0.21
    8 PS417_03910 pilus assembly protein no 0.21
    9 PS417_20175 LysR family transcriptional regulator no 0.21
    10 PS417_03895 methyltransferase no 0.21
    11 PS417_20500 hypothetical protein no 0.20
    12 PS417_11885 Inositol transport system sugar-binding protein (from data) no 0.20
    13 PS417_12060 xylitol ABC transporter, permease component (from data) no 0.20
    14 PS417_20250 copper resistance protein CopC no 0.20
    15 PS417_03065 peptidase A24 no 0.20
    16 PS417_06365 RNA polymerase sigma factor no 0.19
    17 PS417_02145 potassium transporter KefA no 0.19
    18 PS417_11855 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) no 0.19
    19 PS417_12835 GNAT family acetyltransferase 0.76 0.19
    20 PS417_08505 membrane protein no 0.19

    Or look for negative cofitness