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  • Top cofit genes for GFF2994 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: LysR family transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF81 Bll6900 protein no 0.50
    2 GFF4106 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) no 0.49
    3 GFF1638 Siderophore biosynthesis non-ribosomal peptide synthetase modules no 0.48
    4 GFF3913 Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain no 0.46
    5 GFF5629 Uncharacterized MFS-type transporter no 0.46
    6 GFF2087 Ser/Thr and Tyr protein phosphatase (dual specificity) no 0.43
    7 GFF7209 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.41
    8 GFF5266 Transaldolase (EC 2.2.1.2) no 0.41
    9 GFF6235 hypothetical protein no 0.40
    10 GFF6797 Glutamine ABC transporter, ATP-binding protein GlnQ no 0.40
    11 GFF887 Small uncharacterized protein Bpro_4170 no 0.40
    12 GFF1669 hypothetical protein no 0.40
    13 GFF912 putative acetyl esterase no 0.39
    14 GFF6513 Phosphogluconate dehydratase (EC 4.2.1.12) no 0.39
    15 GFF1873 KEGG: LacI family transcriptional regulator no 0.39
    16 GFF3372 hypothetical protein no 0.39
    17 GFF4988 Gentisate 1,2-dioxygenase (EC 1.13.11.4) no 0.38
    18 GFF2050 hypothetical protein no 0.38
    19 GFF707 probable integral membrane protein NMA1898 no 0.38
    20 GFF2948 salicylate esterase no 0.38

    Or look for negative cofitness