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  • Top cofit genes for GFF2981 from Variovorax sp. SCN45

    no description

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2153 type IV pili signal transduction protein PilI no 0.64
    2 GFF4973 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) no 0.62
    3 GFF5946 T6SS Serine/threonine protein kinase (EC 2.7.11.1) PpkA no 0.61
    4 GFF6075 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 0.31 0.58
    5 GFF3825 Autolysin sensor kinase (EC 2.7.3.-) 0.29 0.57
    6 GFF1954 no description no 0.57
    7 GFF993 Type IV pilus biogenesis protein PilF 0.37 0.56
    8 GFF5319 Type IV pilus biogenesis protein PilM 0.31 0.56
    9 GFF778 Channel-forming transporter/cytolysins activator of TpsB family no 0.55
    10 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.55
    11 GFF5128 hypothetical protein no 0.55
    12 GFF5320 Type IV pilus biogenesis protein PilN 0.29 0.55
    13 GFF5416 Type IV fimbrial biogenesis protein PilW no 0.55
    14 GFF3068 FIG00538108: hypothetical protein 0.32 0.55
    15 GFF4432 Two-component system response regulator protein 0.31 0.54
    16 GFF2519 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.32 0.54
    17 GFF5417 hypothetical protein no 0.54
    18 GFF3826 Response regulator receiver:LytTr DNA-binding region 0.32 0.54
    19 GFF2509 Type IV fimbrial assembly protein PilC 0.32 0.54
    20 GFF6290 RNA polymerase sigma-54 factor RpoN no 0.54

    Or look for negative cofitness