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  • Top cofit genes for GFF2980 from Variovorax sp. SCN45

    Intracellular PHB depolymerase PhaZ2
    SEED: Poly-beta-hydroxyalkanoate depolymerase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5403 no description no 0.55
    2 GFF1474 Transcriptional regulator, LysR family no 0.55
    3 GFF3564 BUG/TctC family periplasmic protein no 0.51
    4 GFF4694 no description no 0.48
    5 GFF5360 Putative transmembrane protein no 0.48
    6 GFF5203 hypothetical protein no 0.48
    7 GFF5847 putative membrane protein no 0.46
    8 GFF2319 Arginine exporter protein ArgO no 0.46
    9 GFF5260 Uncharacterized protein ygiD no 0.45
    10 GFF1531 hypothetical protein no 0.45
    11 GFF4702 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.44
    12 GFF4818 Hydroxymethylpyrimidine ABC transporter, substrate-binding component no 0.44
    13 GFF7109 BUG/TctC family periplasmic protein no 0.44
    14 GFF480 Glycine betaine/L-proline transport ATP-binding protein ProV (TC 3.A.1.12.1) 0.35 0.43
    15 GFF4495 Hydrolase, alpha/beta fold family no 0.43
    16 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) no 0.43
    17 GFF1587 no description no 0.43
    18 GFF3775 Two-component transcriptional response regulator, OmpR family no 0.43
    19 GFF6365 T6SS AAA+ chaperone ClpV (TssH) no 0.42
    20 GFF205 Nitroreductase family protein no 0.42

    Or look for negative cofitness