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  • Top cofit genes for GFF298 from Variovorax sp. SCN45

    23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177)
    SEED: LSU m3Psi1915 methyltransferase RlmH
    KEGG: hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2054 RNA binding methyltransferase FtsJ like 0.51 0.61
    2 GFF6950 Acetoacetyl-CoA reductase (EC 1.1.1.36) no 0.59
    3 GFF507 Hydrolase, alpha/beta fold family no 0.59
    4 GFF3368 Pyrimidine permease 0.42 0.57
    5 GFF1499 BUG/TctC family periplasmic protein no 0.57
    6 GFF2786 Sulfate transporter family protein no 0.57
    7 GFF907 Transcriptional regulator, LysR family no 0.55
    8 GFF2394 MotA/TolQ/ExbB proton channel family protein no 0.55
    9 GFF3128 T6SS PAAR-repeat protein / RhaS protein no 0.55
    10 GFF5731 Methyl-accepting chemotaxis sensor/transducer protein no 0.54
    11 GFF3421 Acetoacetyl-CoA synthetase (EC 6.2.1.16) 0.24 0.53
    12 GFF4810 Ferrichrome-iron receptor no 0.53
    13 GFF862 hypothetical protein no 0.52
    14 GFF5241 General secretion pathway protein J no 0.52
    15 GFF6082 MoxR-like ATPase in aerotolerance operon 0.42 0.52
    16 GFF2088 Putative lipase in cluster with Phosphatidate cytidylyltransferase no 0.52
    17 GFF5193 Galactofuranose ABC transporter, substrate-binding protein 0.58 0.51
    18 GFF4579 putative oxidoreductase, nitronate monooxygenase family no 0.51
    19 GFF1771 Hydroxymethylpyrimidine ABC transporter, substrate-binding component no 0.51
    20 GFF5169 hypothetical protein no 0.50

    Or look for negative cofitness