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  • Top cofit genes for GFF2964 from Variovorax sp. SCN45

    L-carnitine dehydratase/bile acid-inducible protein F
    SEED: L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16)
    KEGG: mesaconyl-CoA C1-C4 CoA transferase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF58 Tyrosine-protein kinase (EC 2.7.10.2) 0.23 0.53
    2 GFF6174 Fluoride ion transporter CrcB no 0.52
    3 GFF4701 Various polyols ABC transporter, permease protein 2 no 0.52
    4 GFF5531 hypothetical protein no 0.51
    5 GFF1631 L-lysine 6-monooxygenase (Lysine N(6)-hydroxylase) protein no 0.50
    6 GFF4374 UPF0758 family protein no 0.49
    7 GFF6010 MmgE/PrpD family protein no 0.49
    8 GFF2610 Fructose ABC transporter, permease component FrcC no 0.48
    9 GFF3409 Probable lipoprotein signal peptide no 0.48
    10 GFF7412 no description no 0.48
    11 GFF785 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system no 0.48
    12 GFF4628 hypothetical protein no 0.48
    13 GFF74 Transcriptional regulator, LysR family no 0.48
    14 GFF2903 no description no 0.47
    15 GFF6429 Pyruvate:Oxaloacetate transcarboxylase domain protein no 0.47
    16 GFF7161 Transcriptional regulator, LysR family no 0.47
    17 GFF3743 Twitching motility protein PilT 0.47 0.47
    18 GFF1937 Hemolysins and related proteins containing CBS domains no 0.47
    19 GFF4290 MaoC-like dehydratase no 0.46
    20 GFF1583 Fumarate hydratase class I, beta region (EC 4.2.1.2); L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32) no 0.46

    Or look for negative cofitness