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  • Top cofit genes for GFF2937 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6627 Mobile element protein no 0.58
    2 GFF5488 Protein of unknown function Smg no 0.55
    3 GFF6115 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.52
    4 GFF1319 no description no 0.52
    5 GFF6936 ABC transporter, ATP-binding protein no 0.51
    6 GFF3807 FIG00538552: hypothetical protein no 0.51
    7 GFF1376 hypothetical protein no 0.51
    8 GFF2835 putative TonB-dependent receptor no 0.50
    9 GFF3758 NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4) no 0.49
    10 GFF2521 FIG00931781: hypothetical protein no 0.48
    11 GFF87 no description no 0.48
    12 GFF2836 MotA/TolQ/ExbB proton channel family protein no 0.48
    13 GFF5268 protein of unknown function DUF805 no 0.47
    14 GFF5424 Membrane protein TerC, possibly involved in tellurium resistance no 0.47
    15 GFF5300 ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.47
    16 GFF6153 Transcriptional activator of acetoin/glycerol metabolism no 0.46
    17 GFF1119 Ribonuclease HI (EC 3.1.26.4) no 0.46
    18 GFF5732 Methyl-accepting chemotaxis sensor/transducer protein no 0.46
    19 GFF3344 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains no 0.46
    20 GFF815 COGs COG3777 no 0.46

    Or look for negative cofitness