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  • Top cofit genes for GFF2885 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5811 Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like no 0.62
    2 GFF2296 Putative transmembrane protein no 0.60
    3 GFF6364 VgrG protein no 0.57
    4 GFF102 General secretion pathway protein F no 0.56
    5 GFF1154 Putative transmembrane protein no 0.56
    6 GFF5066 Exodeoxyribonuclease III (EC 3.1.11.2) no 0.56
    7 GFF3670 Two-component system sensor histidine kinase no 0.56
    8 GFF5210 hypothetical protein no 0.55
    9 GFF6513 Phosphogluconate dehydratase (EC 4.2.1.12) 0.35 0.54
    10 GFF5193 Galactofuranose ABC transporter, substrate-binding protein no 0.53
    11 GFF6636 Hydrolase, alpha/beta fold family no 0.53
    12 GFF4443 Cytochrome c-type biogenesis protein ResA no 0.53
    13 GFF6301 Pyruvate:Oxaloacetate transcarboxylase domain protein no 0.52
    14 GFF5868 hypothetical protein no 0.52
    15 GFF5869 internalin, putative no 0.51
    16 GFF4914 Luciferase-like monooxygenase YhbW no 0.51
    17 GFF2078 hypothetical protein no 0.50
    18 GFF3181 FIG005069: Hypothetical protein no 0.50
    19 GFF5261 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) no 0.50
    20 GFF4924 Transmembrane component BioN of energizing module of biotin ECF transporter no 0.50

    Or look for negative cofitness