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  • Top cofit genes for GFF2718 from Variovorax sp. SCN45

    ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines)
    SEED: amino acid ABC transporter ATP-binding protein
    KEGG: polar amino acid transport system ATP-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6480 hypothetical protein no 0.68
    2 GFF2111 Permease of the drug/metabolite transporter (DMT) superfamily no 0.63
    3 GFF7043 Putative transmembrane protein no 0.62
    4 GFF784 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.61
    5 GFF5468 FAD/FMN-containing dehydrogenase no 0.60
    6 GFF2400 no description no 0.60
    7 GFF6107 Zinc transporter, ZIP family no 0.59
    8 GFF2239 no description no 0.57
    9 GFF2367 Transcriptional regulator, LysR family no 0.57
    10 GFF3789 hypothetical protein no 0.57
    11 GFF3101 RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein no 0.57
    12 GFF2167 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.57
    13 GFF4228 2-hydroxychromene-2-carboxylate isomerase no 0.57
    14 GFF1518 3-dehydroquinate dehydratase II (EC 4.2.1.10) no 0.56
    15 GFF4821 Transcriptional regulator, AcrR family 0.25 0.56
    16 GFF7368 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.56
    17 GFF2968 MaoC-like dehydratase no 0.56
    18 GFF5390 RecA protein no 0.54
    19 GFF2859 Excinuclease ABC subunit C no 0.54
    20 GFF3787 Biotin carboxylase (EC 6.3.4.14) no 0.54

    Or look for negative cofitness