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  • Top cofit genes for PS417_13780 from Pseudomonas simiae WCS417

    integrase
    SEED: Site-specific recombinase, phage integrase family

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_13805 4-amino-4-deoxy-L-arabinose transferase 0.33 0.50
    2 PS417_17785 4-amino-4-deoxy-L-arabinose transferase no 0.48
    3 PS417_21515 transcriptional regulator no 0.47
    4 PS417_13795 UDP-4-amino-4-deoxy-L-arabinose formyltransferase 0.27 0.46
    5 PS417_13785 hypothetical protein no 0.46
    6 PS417_13820 UDP-glucose 6-dehydrogenase 0.22 0.45
    7 PS417_14960 ATPase no 0.45
    8 PS417_13790 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase 0.23 0.43
    9 PS417_27285 Xaa-Pro aminopeptidase no 0.39
    10 PS417_14965 transcriptional regulator no 0.39
    11 PS417_22815 permease no 0.38
    12 PS417_25650 anhydro-N-acetylmuramic acid kinase no 0.38
    13 PS417_07120 RNA polymerase sigma-H factor no 0.37
    14 PS417_24835 hypothetical protein 0.34 0.37
    15 PS417_12585 acriflavine resistance protein B no 0.36
    16 PS417_05505 adenosylmethionine-8-amino-7-oxononanoate aminotransferase no 0.35
    17 PS417_05525 Fis family transcriptional regulator no 0.34
    18 PS417_27245 aminotransferase DegT no 0.33
    19 PS417_04275 hypothetical protein 0.35 0.32
    20 PS417_17170 carbon-nitrogen hydrolase no 0.32

    Or look for negative cofitness