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  • Top cofit genes for GFF2640 from Variovorax sp. SCN45

    PKHD-type hydroxylase YbiX
    SEED: Iron-uptake factor PiuC
    KEGG: PKHD-type hydroxylase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF816 L-carnitine dehydratase/bile acid-inducible protein F no 0.63
    2 GFF2602 no description no 0.59
    3 GFF4445 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) no 0.59
    4 GFF3488 Transcriptional regulator, GntR family no 0.56
    5 GFF3231 hypothetical protein no 0.56
    6 GFF5973 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) no 0.56
    7 GFF6780 Energy-dependent translational throttle protein EttA no 0.55
    8 GFF3787 Biotin carboxylase (EC 6.3.4.14) no 0.54
    9 GFF6928 Putative transmembrane protein no 0.54
    10 GFF3050 Lactam utilization protein LamB no 0.53
    11 GFF3986 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.53
    12 GFF2689 Protein containing transglutaminase-like domain, putative cysteine protease no 0.53
    13 GFF4302 hypothetical protein AF1210 no 0.53
    14 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) no 0.53
    15 GFF2239 no description no 0.53
    16 GFF2164 Transcriptional regulator, IclR family no 0.53
    17 GFF1173 P-hydroxybenzoate hydroxylase (EC 1.14.13.2) 0.29 0.52
    18 GFF2561 FIG00931134: hypothetical protein no 0.52
    19 GFF6047 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) no 0.52
    20 GFF6579 Conjugative transfer protein TrbB no 0.52

    Or look for negative cofitness