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  • Top cofit genes for GFF2623 from Variovorax sp. SCN45

    Aspartate aminotransferase
    SEED: LSU ribosomal protein L4p (L1e)
    KEGG: aspartate 4-decarboxylase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5412 no description no 0.68
    2 GFF3886 Putative transmembrane protein no 0.66
    3 GFF33 Type IV pilus biogenesis protein PilZ no 0.62
    4 GFF5490 Uncharacterized protein with LysM domain, COG1652 no 0.61
    5 GFF5415 Type IV fimbrial biogenesis protein PilV no 0.61
    6 GFF2155 Signal transduction histidine kinase CheA no 0.61
    7 GFF2285 Transcriptional regulator, RpiR family no 0.61
    8 GFF5419 Type IV pilus biogenesis protein PilE no 0.61
    9 GFF5322 Type IV pilus biogenesis protein PilP no 0.60
    10 GFF3068 FIG00538108: hypothetical protein no 0.60
    11 GFF2519 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) no 0.60
    12 GFF3826 Response regulator receiver:LytTr DNA-binding region no 0.60
    13 GFF5417 hypothetical protein no 0.60
    14 GFF5323 Type IV pilus biogenesis protein PilQ no 0.60
    15 GFF2509 Type IV fimbrial assembly protein PilC no 0.59
    16 GFF5319 Type IV pilus biogenesis protein PilM no 0.59
    17 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.59
    18 GFF5414 hypothetical protein no 0.59
    19 GFF5321 Type IV pilus biogenesis protein PilO no 0.59
    20 GFF5320 Type IV pilus biogenesis protein PilN no 0.58

    Or look for negative cofitness