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  • Top cofit genes for GFF2619 from Variovorax sp. SCN45

    Rhs-family protein
    SEED: Rhs family protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3743 Twitching motility protein PilT no 0.70
    2 GFF2155 Signal transduction histidine kinase CheA no 0.70
    3 GFF2162 Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) no 0.69
    4 GFF3886 Putative transmembrane protein no 0.67
    5 GFF6290 RNA polymerase sigma-54 factor RpoN no 0.67
    6 GFF2153 type IV pili signal transduction protein PilI no 0.66
    7 GFF6075 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB no 0.65
    8 GFF5321 Type IV pilus biogenesis protein PilO no 0.64
    9 GFF2519 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) no 0.64
    10 GFF5417 hypothetical protein no 0.64
    11 GFF33 Type IV pilus biogenesis protein PilZ no 0.63
    12 GFF5319 Type IV pilus biogenesis protein PilM no 0.63
    13 GFF5415 Type IV fimbrial biogenesis protein PilV no 0.63
    14 GFF5412 no description no 0.63
    15 GFF5414 hypothetical protein no 0.63
    16 GFF5419 Type IV pilus biogenesis protein PilE no 0.63
    17 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.63
    18 GFF5416 Type IV fimbrial biogenesis protein PilW no 0.63
    19 GFF2510 Type IV fimbrial assembly, ATPase PilB no 0.62
    20 GFF4432 Two-component system response regulator protein no 0.62

    Or look for negative cofitness