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Cofit
Protein
Homologs
Top cofit genes for GFF2619 from
Variovorax sp. SCN45
Rhs-family protein
SEED: Rhs family protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF3743
Twitching motility protein PilT
no
0.70
2
GFF2155
Signal transduction histidine kinase CheA
no
0.70
3
GFF2162
Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
no
0.69
4
GFF3886
Putative transmembrane protein
no
0.67
5
GFF6290
RNA polymerase sigma-54 factor RpoN
no
0.67
6
GFF2153
type IV pili signal transduction protein PilI
no
0.66
7
GFF6075
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
no
0.65
8
GFF5321
Type IV pilus biogenesis protein PilO
no
0.64
9
GFF2519
FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
no
0.64
10
GFF5417
hypothetical protein
no
0.64
11
GFF33
Type IV pilus biogenesis protein PilZ
no
0.63
12
GFF5319
Type IV pilus biogenesis protein PilM
no
0.63
13
GFF5415
Type IV fimbrial biogenesis protein PilV
no
0.63
14
GFF5412
no description
no
0.63
15
GFF5414
hypothetical protein
no
0.63
16
GFF5419
Type IV pilus biogenesis protein PilE
no
0.63
17
GFF5418
Type IV fimbrial biogenesis protein PilY1
no
0.63
18
GFF5416
Type IV fimbrial biogenesis protein PilW
no
0.63
19
GFF2510
Type IV fimbrial assembly, ATPase PilB
no
0.62
20
GFF4432
Two-component system response regulator protein
no
0.62
Or look for
negative cofitness