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  • Top cofit genes for GFF2601 from Variovorax sp. SCN45

    Transcriptional regulator, IclR family
    SEED: Transcriptional regulator, IclR family
    KEGG: IclR family transcriptional regulator, pca regulon regulatory protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6834 no description no 0.59
    2 GFF5587 Acetoin dehydrogenase E1 component alpha-subunit (EC 2.3.1.190) no 0.52
    3 GFF3506 Superoxide dismutase [Fe] (EC 1.15.1.1) no 0.51
    4 GFF6509 hypothetical protein no 0.50
    5 GFF4151 RidA/YER057c/UK114 superfamily, group 1 no 0.50
    6 GFF5440 RNA polymerase ECF-type sigma factor no 0.49
    7 GFF17 hypothetical protein no 0.48
    8 GFF7281 no description no 0.48
    9 GFF2541 FIG00899427: hypothetical protein no 0.48
    10 GFF2729 hypothetical protein no 0.48
    11 GFF2480 Urease accessory protein UreG no 0.47
    12 GFF1752 Cysteine dioxygenase (EC 1.13.11.20) no 0.47
    13 GFF4038 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family no 0.47
    14 GFF675 KEGG: 2'-5' RNA ligase no 0.47
    15 GFF1284 Transcriptional regulator, LysR family no 0.46
    16 GFF849 putative carboxylesterase no 0.46
    17 GFF2685 DNA internalization-related competence protein ComEC/Rec2 no 0.46
    18 GFF6798 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.46
    19 GFF4719 hypothetical protein no 0.45
    20 GFF2109 FIG00454067: hypothetical protein no 0.45

    Or look for negative cofitness