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  • Top cofit genes for GFF2556 from Variovorax sp. SCN45

    UPF0337 family protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3710 Lactoylglutathione lyase and related lyases no 0.55
    2 GFF6090 Acyl-coenzyme A thioesterase PaaD (Pse.pu.) (E. coli PaaI) no 0.54
    3 GFF7246 HtrA protease/chaperone protein no 0.53
    4 GFF4527 Transcriptional regulator, GntR family no 0.53
    5 GFF3444 BUG/TctC family periplasmic protein no 0.53
    6 GFF4 VapC toxin protein no 0.52
    7 GFF6602 Type IV secretory pathway, protease TraF no 0.51
    8 GFF7335 no description no 0.50
    9 GFF4300 Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) / conserved protein associated with acetyl-CoA C-acyltransferase no 0.49
    10 GFF4670 Transcriptional regulator, AcrR family no 0.49
    11 GFF6065 Two-component transcriptional response regulator receiver domain no 0.48
    12 GFF5299 TonB-dependent receptor no 0.48
    13 GFF823 Inner membrane protein YbaL, KefB/KefC family no 0.48
    14 GFF3739 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) no 0.48
    15 GFF2857 Permease of the drug/metabolite transporter (DMT) superfamily no 0.48
    16 GFF2862 FIG01199081: hypothetical protein no 0.48
    17 GFF2105 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) no 0.47
    18 GFF468 Transcriptional regulator, LysR family no 0.47
    19 GFF3999 GMP reductase (EC 1.7.1.7) no 0.46
    20 GFF5918 T6SS component TssC (ImpC/VipB) no 0.46

    Or look for negative cofitness