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Cofit
Protein
Homologs
Top cofit genes for GFF2554 from
Variovorax sp. SCN45
Integral membrane protein
SEED: Integral membrane protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF1755
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
no
0.65
2
GFF3525
Protein tyrosine/serine phosphatase
no
0.60
3
GFF1086
putative Glutathione-regulated potassium-efflux system protein KefB
no
0.58
4
GFF5272
Various polyols ABC transporter, substrate-binding protein
no
0.58
5
GFF6861
no description
no
0.57
6
GFF3426
Predicted kinase
no
0.56
7
GFF3518
no description
no
0.56
8
GFF3071
ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13)
no
0.54
9
GFF2275
3-methylmercaptopropionyl-CoA dehydrogenase (DmdC)
no
0.54
10
GFF7311
Putative transmembrane lipoprotein
no
0.51
11
GFF6300
CaiB/BaiF family protein
no
0.49
12
GFF1911
ABC transporter, substrate-binding protein (cluster 11, riboflavin/purine nucleoside/unknown)
no
0.49
13
GFF6592
hypothetical protein
no
0.48
14
GFF4164
Thymidine phosphorylase (EC 2.4.2.4)
no
0.48
15
GFF4551
Putative preQ0 transporter YhhQ
no
0.48
16
GFF6579
Conjugative transfer protein TrbB
no
0.48
17
GFF5092
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-)
no
0.47
18
GFF1385
Multidrug resistance transporter, Bcr/CflA family
no
0.47
19
GFF1961
Prephenate dehydratase (EC 4.2.1.51) @ Arogenate dehydratase (EC 4.2.1.91)
no
0.47
20
GFF784
KEGG: RNA polymerase sigma-70 factor, ECF subfamily
no
0.47
Or look for
negative cofitness