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  • Top cofit genes for GFF2548 from Variovorax sp. SCN45

    Uncharacterized membrane anchored protein Mext_4159
    SEED: Transporter

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4316 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.62
    2 GFF3277 Membrane protein insertion efficiency factor YidD 0.71 0.57
    3 GFF2367 Transcriptional regulator, LysR family no 0.55
    4 GFF2493 YheO-like PAS domain 0.42 0.53
    5 GFF582 Two-component system sensor histidine kinase no 0.52
    6 GFF2167 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.52
    7 GFF1003 HflC protein no 0.52
    8 GFF6892 Uncharacterized glutathione S-transferase-like protein no 0.51
    9 GFF1680 KEGG: GntR family transcriptional regulator no 0.51
    10 GFF7043 Putative transmembrane protein no 0.51
    11 GFF1401 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.50
    12 GFF1168 Arginyl-tRNA--protein transferase (EC 2.3.2.8) 0.37 0.50
    13 GFF978 Propionate--CoA ligase (EC 6.2.1.17) no 0.50
    14 GFF963 Oligopeptidase A (EC 3.4.24.70) no 0.50
    15 GFF310 FIG025233: SAM-dependent methyltransferases no 0.50
    16 GFF745 BUG/TctC family periplasmic protein no 0.50
    17 GFF22 hypothetical protein no 0.50
    18 GFF5023 Ammonium transporter no 0.49
    19 GFF1993 3-ketoacyl-CoA thiolase (EC 2.3.1.16) 0.68 0.49
    20 GFF2077 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative no 0.48

    Or look for negative cofitness