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  • Top cofit genes for PS417_12910 from Pseudomonas simiae WCS417

    alanine racemase
    SEED: Type III PLP / low-specificity D-threonine aldolase

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_22855 ssDNA exonuclease RecJ 0.52 0.31
    2 PS417_00625 taurine dioxygenase no 0.29
    3 PS417_00630 nitrate ABC transporter substrate-binding protein no 0.27
    4 PS417_24275 diguanylate phosphodiesterase no 0.27
    5 PS417_03155 transcriptional regulator no 0.25
    6 PS417_05425 histidine kinase no 0.25
    7 PS417_20570 3-oxoacyl-ACP synthase no 0.24
    8 PS417_13685 HxlR family transcriptional regulator no 0.24
    9 PS417_19030 sodium:dicarboxylate symporter no 0.24
    10 PS417_00040 ATPase no 0.23
    11 PS417_05400 hypothetical protein no 0.23
    12 PS417_18280 transporter no 0.22
    13 PS417_00350 methionine ABC transporter substrate-binding protein no 0.22
    14 PS417_15775 short-chain dehydrogenase no 0.22
    15 PS417_19825 ATPase AAA no 0.22
    16 PS417_06135 glycerol-3-phosphate acyltransferase no 0.22
    17 PS417_23025 murein transglycosylase 0.26 0.22
    18 PS417_16995 LysR family transcriptional regulator no 0.22
    19 PS417_22210 AraC family transcriptional regulator no 0.22
    20 PS417_13835 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) 0.36 0.21

    Or look for negative cofitness