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  • Top cofit genes for PS417_12610 from Pseudomonas simiae WCS417

    RNA polymerase sigma factor
    SEED: RNA polymerase sigma factor
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_06365 RNA polymerase sigma factor 0.27 0.69
    2 PS417_21050 serine acetyltransferase no 0.68
    3 PS417_13425 cupin no 0.67
    4 PS417_21040 sulfurylase no 0.66
    5 PS417_12825 MFS transporter no 0.63
    6 PS417_23950 polynucleotide phosphorylase/polyadenylase no 0.63
    7 PS417_16370 chemotaxis protein CheY 0.59 0.61
    8 PS417_19145 membrane protein no 0.61
    9 PS417_21045 cysteine synthase no 0.60
    10 PS417_10720 chemotaxis protein CheY no 0.60
    11 PS417_16070 TonB-dependent receptor no 0.60
    12 PS417_20955 secretion protein no 0.59
    13 PS417_28265 pyridoxamine kinase 0.62 0.58
    14 PS417_05975 chemotaxis protein CheW no 0.58
    15 PS417_11170 aldehyde dehydrogenase no 0.57
    16 PS417_22230 class I peptide chain release factor no 0.57
    17 PS417_03070 LuxR family transcriptional regulator no 0.55
    18 PS417_16160 ABC transporter substrate-binding protein no 0.54
    19 PS417_23645 amino acid permease no 0.53
    20 PS417_12530 LysR family transcriptional regulator no 0.53

    Or look for negative cofitness