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  • Top cofit genes for PS417_12530 from Pseudomonas simiae WCS417

    LysR family transcriptional regulator
    SEED: Transcriptional regulator in custer with plant-induced nitrilase

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_06365 RNA polymerase sigma factor no 0.56
    2 PS417_13425 cupin no 0.54
    3 PS417_12610 RNA polymerase sigma factor no 0.53
    4 PS417_21040 sulfurylase no 0.52
    5 PS417_21050 serine acetyltransferase no 0.51
    6 PS417_16370 chemotaxis protein CheY no 0.50
    7 PS417_10720 chemotaxis protein CheY no 0.49
    8 PS417_21045 cysteine synthase no 0.49
    9 PS417_23950 polynucleotide phosphorylase/polyadenylase no 0.49
    10 PS417_28265 pyridoxamine kinase 0.18 0.48
    11 PS417_16070 TonB-dependent receptor no 0.47
    12 PS417_16160 ABC transporter substrate-binding protein no 0.46
    13 PS417_12825 MFS transporter no 0.46
    14 PS417_20955 secretion protein no 0.46
    15 PS417_06970 LysR family transcriptional regulator no 0.45
    16 PS417_19145 membrane protein no 0.45
    17 PS417_13940 racemase no 0.44
    18 PS417_03070 LuxR family transcriptional regulator no 0.44
    19 PS417_05975 chemotaxis protein CheW no 0.43
    20 PS417_22230 class I peptide chain release factor 0.65 0.42

    Or look for negative cofitness