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Cofit
Protein
Homologs
Top cofit genes for GFF2446 from
Variovorax sp. SCN45
FIG00956403: hypothetical protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF821
Acetoacetyl-CoA reductase (EC 1.1.1.36)
no
0.63
2
GFF3825
Autolysin sensor kinase (EC 2.7.3.-)
no
0.61
3
GFF4485
FIG00715336: hypothetical protein
no
0.61
4
GFF2379
Serine/threonine protein kinase
no
0.58
5
GFF6102
hypothetical protein
no
0.58
6
GFF5178
Transcriptional regulator, Xre-family with cupin domain
no
0.57
7
GFF2510
Type IV fimbrial assembly, ATPase PilB
no
0.56
8
GFF6290
RNA polymerase sigma-54 factor RpoN
0.48
0.56
9
GFF5322
Type IV pilus biogenesis protein PilP
no
0.56
10
GFF4530
MBL-fold metallo-hydrolase superfamily
no
0.56
11
GFF5490
Uncharacterized protein with LysM domain, COG1652
0.19
0.56
12
GFF4386
FIG00457034: hypothetical protein
no
0.56
13
GFF6732
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
no
0.56
14
GFF2210
Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
0.17
0.56
15
GFF3497
Transcriptional regulator, Crp/Fnr family
no
0.55
16
GFF5319
Type IV pilus biogenesis protein PilM
no
0.55
17
GFF5419
Type IV pilus biogenesis protein PilE
no
0.55
18
GFF5416
Type IV fimbrial biogenesis protein PilW
no
0.55
19
GFF5325
3-dehydroquinate synthase (EC 4.2.3.4)
0.64
0.55
20
GFF5320
Type IV pilus biogenesis protein PilN
no
0.54
Or look for
negative cofitness