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  • Top cofit genes for GFF2446 from Variovorax sp. SCN45

    FIG00956403: hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF821 Acetoacetyl-CoA reductase (EC 1.1.1.36) no 0.63
    2 GFF3825 Autolysin sensor kinase (EC 2.7.3.-) no 0.61
    3 GFF4485 FIG00715336: hypothetical protein no 0.61
    4 GFF2379 Serine/threonine protein kinase no 0.58
    5 GFF6102 hypothetical protein no 0.58
    6 GFF5178 Transcriptional regulator, Xre-family with cupin domain no 0.57
    7 GFF2510 Type IV fimbrial assembly, ATPase PilB no 0.56
    8 GFF6290 RNA polymerase sigma-54 factor RpoN 0.48 0.56
    9 GFF5322 Type IV pilus biogenesis protein PilP no 0.56
    10 GFF4530 MBL-fold metallo-hydrolase superfamily no 0.56
    11 GFF5490 Uncharacterized protein with LysM domain, COG1652 0.19 0.56
    12 GFF4386 FIG00457034: hypothetical protein no 0.56
    13 GFF6732 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) no 0.56
    14 GFF2210 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly 0.17 0.56
    15 GFF3497 Transcriptional regulator, Crp/Fnr family no 0.55
    16 GFF5319 Type IV pilus biogenesis protein PilM no 0.55
    17 GFF5419 Type IV pilus biogenesis protein PilE no 0.55
    18 GFF5416 Type IV fimbrial biogenesis protein PilW no 0.55
    19 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) 0.64 0.55
    20 GFF5320 Type IV pilus biogenesis protein PilN no 0.54

    Or look for negative cofitness