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  • Top cofit genes for GFF2431 from Variovorax sp. SCN45

    RNA polymerase ECF-type sigma factor
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6074 Tripartite tricarboxylate transporter TctB family no 0.57
    2 GFF5519 Transcriptional regulator no 0.56
    3 GFF3566 Transcriptional regulator, LysR family no 0.55
    4 GFF6821 ribonuclease H no 0.53
    5 GFF823 Inner membrane protein YbaL, KefB/KefC family no 0.52
    6 GFF1064 Transcriptional regulator, GntR family no 0.51
    7 GFF2105 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) no 0.50
    8 GFF3434 Organic hydroperoxide resistance protein no 0.48
    9 GFF694 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-) no 0.48
    10 GFF2081 no description no 0.47
    11 GFF181 Protein of unknown function (DUF1501) no 0.47
    12 GFF1021 Transcriptional regulator, Xre-family with cupin domain no 0.46
    13 GFF4899 Transcriptional regulator, Crp/Fnr family no 0.46
    14 GFF1686 Uncharacterized protein Bsu YraM no 0.46
    15 GFF2571 Glutaredoxin 3 (Grx3) no 0.45
    16 GFF1818 FIG00932412: hypothetical protein no 0.44
    17 GFF6588 Glyoxylate carboligase (EC 4.1.1.47) no 0.44
    18 GFF1617 Phosphonate uptake and metabolism regulator, LysR-family no 0.44
    19 GFF4619 Altronate dehydratase (EC 4.2.1.7) no 0.44
    20 GFF3748 KEGG: dihydrodipicolinate synthase no 0.44

    Or look for negative cofitness