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  • Top cofit genes for GFF2426 from Variovorax sp. SCN45

    ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2442 RND efflux system, membrane fusion protein 0.62 0.59
    2 GFF1375 Transcriptional regulator, LysR family no 0.56
    3 GFF88 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) no 0.55
    4 GFF4967 Glutathione S-transferase family protein 0.27 0.55
    5 GFF1924 Aliphatic sulfonate monooxygenase family, FMNH2- or F420-dependent 0.18 0.51
    6 GFF4196 no description no 0.50
    7 GFF6910 Xanthine permease no 0.48
    8 GFF2032 Excinuclease ABC subunit A, dimeric form no 0.48
    9 GFF1919 Rhodanese-related sulfurtransferase, 4 domains no 0.48
    10 GFF3455 Two component response regulator associated with urea and amide use no 0.48
    11 GFF3502 hypothetical protein no 0.48
    12 GFF3274 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases no 0.47
    13 GFF1597 Acetolactate synthase large subunit (EC 2.2.1.6) no 0.47
    14 GFF3566 Transcriptional regulator, LysR family no 0.47
    15 GFF1790 Hydroxymethylpyrimidine ABC transporter, ATPase component 0.16 0.47
    16 GFF1951 no description no 0.47
    17 GFF582 Two-component system sensor histidine kinase no 0.46
    18 GFF3777 Prolyl endopeptidase (EC 3.4.21.26) no 0.46
    19 GFF7105 Homoprotocatechuate degradative operon repressor no 0.45
    20 GFF6396 hypothetical protein 0.18 0.45

    Or look for negative cofitness