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Cofit
Protein
Homologs
Top cofit genes for GFF2422 from
Variovorax sp. SCN45
Polysaccharide deacetylase
SEED: Polysaccharide deacetylase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF7364
no description
no
0.68
2
GFF2205
hypothetical protein
no
0.67
3
GFF2367
Transcriptional regulator, LysR family
no
0.66
4
GFF5946
T6SS Serine/threonine protein kinase (EC 2.7.11.1) PpkA
no
0.63
5
GFF3466
FIG00932805: hypothetical protein
no
0.62
6
GFF2136
Ribokinase (EC 2.7.1.15)
no
0.62
7
GFF3864
Sigma factor RpoE negative regulatory protein RseA
no
0.61
8
GFF7086
Transcriptional regulator, IclR family
no
0.61
9
GFF299
Ribosomal silencing factor RsfA
no
0.60
10
GFF1190
Glycine oxidase ThiO (EC 1.4.3.19)
no
0.57
11
GFF900
hypothetical protein
no
0.57
12
GFF1187
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
no
0.57
13
GFF1003
HflC protein
no
0.56
14
GFF1451
FIG00456379: hypothetical protein
no
0.56
15
GFF126
Repressor homolog
no
0.56
16
GFF1969
ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate)
no
0.56
17
GFF6870
FIG00904791: hypothetical protein
no
0.56
18
GFF1364
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
no
0.56
19
GFF268
Carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23)
no
0.56
20
GFF3118
Membrane alanine aminopeptidase N (EC 3.4.11.2)
no
0.55
Or look for
negative cofitness