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  • Top cofit genes for GFF2416 from Variovorax sp. SCN45

    Transcriptional regulator YbhD, LysR family
    SEED: LysR family transcriptional regulator YbhD

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6385 Mll4878 protein no 0.59
    2 GFF2680 Protein of unknown function DUF1058 no 0.58
    3 GFF293 no description no 0.58
    4 GFF6435 no description no 0.58
    5 GFF3908 FIG00582414: hypothetical protein no 0.56
    6 GFF1527 Ferrichrome-iron receptor no 0.55
    7 GFF5470 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.54
    8 GFF5053 Uncharacterized protein SPO0681 no 0.53
    9 GFF320 RNA polymerase ECF-type sigma factor no 0.53
    10 GFF4544 RNA polymerase sigma factor RpoE no 0.52
    11 GFF2410 Intracellular protease no 0.52
    12 GFF5552 MaoC domain protein dehydratase no 0.51
    13 GFF7360 Urea ABC transporter, substrate-binding protein UrtA no 0.51
    14 GFF1479 Aldehyde dehydrogenase (EC 1.2.1.3) no 0.51
    15 GFF7100 similar to protocatechuate 4,5-dioxygenase beta chain no 0.50
    16 GFF267 no description no 0.50
    17 GFF5735 Flagellar hook-associated protein FlgK 0.18 0.50
    18 GFF2902 ABC transporter, substrate-binding protein (cluster 13, osmolytes) / ABC transporter, permease protein (cluster 13, osmolytes) no 0.50
    19 GFF1217 Transcriptional regulator RpiR in protein degradation cluster no 0.50
    20 GFF862 hypothetical protein no 0.49

    Or look for negative cofitness