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  • Top cofit genes for GFF2373 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Probable LysR-family transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1755 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.59
    2 GFF3834 hypothetical protein no 0.55
    3 GFF1451 FIG00456379: hypothetical protein no 0.53
    4 GFF4132 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme no 0.52
    5 GFF6773 Transcriptional regulator, GntR family no 0.52
    6 GFF3525 Protein tyrosine/serine phosphatase no 0.50
    7 GFF2367 Transcriptional regulator, LysR family no 0.50
    8 GFF3518 no description no 0.50
    9 GFF6579 Conjugative transfer protein TrbB no 0.49
    10 GFF2781 Phosphopantetheine-binding no 0.49
    11 GFF3956 no description no 0.49
    12 GFF128 hypothetical protein no 0.49
    13 GFF2699 4Fe-4S ferredoxin, iron-sulfur binding no 0.48
    14 GFF7174 no description no 0.48
    15 GFF3762 hypothetical protein no 0.48
    16 GFF686 porin, Gram-negative type no 0.47
    17 GFF4556 hypothetical protein no 0.47
    18 GFF2657 putative oxidoreductase, nitronate monooxygenase family no 0.47
    19 GFF7255 BUG/TctC family periplasmic protein no 0.46
    20 GFF1096 Phosphate transport system regulatory protein PhoU 0.37 0.46

    Or look for negative cofitness