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  • Top cofit genes for GFF2366 from Variovorax sp. SCN45

    Tricarboxylate transport protein TctC
    SEED: Tricarboxylate transport protein TctC

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6374 predicted 2-keto-3-deoxyxylonate dehydratase no 0.65
    2 GFF2032 Excinuclease ABC subunit A, dimeric form no 0.64
    3 GFF2357 DNA repair protein RecN no 0.63
    4 GFF2909 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) no 0.62
    5 GFF5264 Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1) no 0.61
    6 GFF1917 ATP-dependent RNA helicase Bcep18194_A5658 no 0.59
    7 GFF6834 no description no 0.59
    8 GFF1159 Acetolactate synthase small subunit (EC 2.2.1.6) no 0.59
    9 GFF6634 DNA mismatch repair protein MutS no 0.57
    10 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) no 0.57
    11 GFF2801 Homoserine dehydrogenase (EC 1.1.1.3) no 0.56
    12 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) no 0.55
    13 GFF6798 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) 0.34 0.55
    14 GFF374 Transcription elongation factor GreA no 0.55
    15 GFF2498 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) no 0.55
    16 GFF5528 Conjugative transfer protein TrbL no 0.55
    17 GFF2616 no description no 0.55
    18 GFF3975 Metal-dependent hydrolase no 0.55
    19 GFF6653 Aminotransferase, class III no 0.55
    20 GFF6633 hypothetical protein no 0.54

    Or look for negative cofitness