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  • Top cofit genes for PS417_11995 from Pseudomonas simiae WCS417

    RNA polymerase sigma factor
    SEED: RNA polymerase sigma factor RpoE
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_00300 cytochrome B559 subunit alpha no 0.24
    2 PS417_14620 hypothetical protein no 0.23
    3 PS417_15950 major facilitator transporter no 0.22
    4 PS417_15580 DNA polymerase no 0.22
    5 PS417_28525 RNA polymerase sigma factor no 0.21
    6 PS417_03430 methyltransferase type 11 no 0.21
    7 PS417_26385 amino acid ABC transporter substrate-binding protein 0.16 0.21
    8 PS417_20455 hypothetical protein no 0.20
    9 PS417_22940 MFS transporter no 0.20
    10 PS417_05475 arginase no 0.20
    11 PS417_16235 ABC transporter ATP-binding protein no 0.19
    12 PS417_07385 2-hydroxyacid dehydrogenase 0.13 0.19
    13 PS417_15785 porin no 0.19
    14 PS417_14875 polyisoprenoid-binding protein no 0.18
    15 PS417_28405 hypothetical protein no 0.18
    16 PS417_27865 LysR family transcriptional regulator 0.36 0.18
    17 PS417_08355 glycosylase 0.59 0.18
    18 PS417_18880 SAM-dependent methyltransferase no 0.18
    19 PS417_05600 dehydrogenase no 0.18
    20 PS417_26115 glutamine ABC transporter ATP-binding protein no 0.18

    Or look for negative cofitness