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  • Top cofit genes for GFF2336 from Variovorax sp. SCN45

    Transcriptional regulator, AraC family
    SEED: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1138 Transcriptional regulator, AcrR family no 0.63
    2 GFF4615 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 0.36 0.61
    3 GFF3557 hypothetical protein no 0.61
    4 GFF7212 Nitrilotriacetate monooxygenase [FMNH2] no 0.58
    5 GFF4192 no description no 0.57
    6 GFF744 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases no 0.55
    7 GFF3468 Nucleoside-diphosphate-sugar epimerases no 0.54
    8 GFF5047 hypothetical protein no 0.54
    9 GFF6757 no description no 0.54
    10 GFF3450 Transcriptional regulator, LacI family no 0.52
    11 GFF1600 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) no 0.50
    12 GFF1248 FMN reductase (NADPH) (EC 1.5.1.38) no 0.50
    13 GFF5066 Exodeoxyribonuclease III (EC 3.1.11.2) no 0.50
    14 GFF3754 Fumarylacetoacetate hydrolase family protein no 0.49
    15 GFF4537 Tetrapartite efflux system, inner membrane component FusBC-like no 0.49
    16 GFF5075 Two-component system sensor histidine kinase Dtpsy_0212 no 0.49
    17 GFF117 no description no 0.49
    18 GFF2302 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) no 0.49
    19 GFF3148 no description no 0.49
    20 GFF5004 N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) no 0.48

    Or look for negative cofitness