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  • Top cofit genes for GFF2332 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Chromosome initiation inhibitor

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2999 Putative transmembrane protein no 0.60
    2 GFF634 Urea ABC transporter, permease protein UrtC no 0.59
    3 GFF2300 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 no 0.58
    4 GFF2302 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) no 0.58
    5 GFF3723 Cytochrome c5 no 0.55
    6 GFF5310 Cytochrome c4 no 0.54
    7 GFF1669 hypothetical protein no 0.54
    8 GFF1154 Putative transmembrane protein no 0.54
    9 GFF2998 Virulence factor BrkB 0.29 0.53
    10 GFF2304 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion no 0.52
    11 GFF5158 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) no 0.51
    12 GFF5266 Transaldolase (EC 2.2.1.2) no 0.51
    13 GFF4 VapC toxin protein no 0.50
    14 GFF879 BUG/TctC family periplasmic protein no 0.50
    15 GFF3384 Transcriptional regulator, Crp/Fnr family no 0.50
    16 GFF2453 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT (EC 1.3.1.1) no 0.49
    17 GFF4822 Thiamine pyrophosphate-requiring enzymes 0.19 0.49
    18 GFF3704 FIG00536957: hypothetical protein no 0.48
    19 GFF2306 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA no 0.48
    20 GFF909 Alcohol dehydrogenase (EC 1.1.1.1) no 0.48

    Or look for negative cofitness