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  • Top cofit genes for GFF2318 from Variovorax sp. SCN45

    Transcriptional regulator ArgP, LysR family
    SEED: Transcriptional regulator, LysR family
    KEGG: LysR family transcriptional regulator, chromosome initiation inhibitor

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3555 Mg-chelatase subunit ChlD no 0.54
    2 GFF4943 Chloride channel protein no 0.53
    3 GFF5108 FIG00348319: hypothetical protein 0.34 0.52
    4 GFF1863 Uncharacterized MFS-type transporter no 0.51
    5 GFF1499 BUG/TctC family periplasmic protein no 0.50
    6 GFF4487 putative secreted protein no 0.49
    7 GFF1392 Monooxygenase, flavin-binding family no 0.48
    8 GFF2770 BUG/TctC family periplasmic protein no 0.48
    9 GFF4699 ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron) no 0.47
    10 GFF2823 Hemin transport protein HmuS no 0.47
    11 GFF3670 Two-component system sensor histidine kinase no 0.47
    12 GFF2759 hypothetical protein no 0.47
    13 GFF2099 Acyl-CoA dehydrogenase no 0.46
    14 GFF3586 ABC-type Fe3+ transport system, periplasmic component no 0.46
    15 GFF4498 Exoenzymes regulatory protein AepA precursor 0.22 0.46
    16 GFF4901 no description no 0.46
    17 GFF2051 FIG00463476: hypothetical protein 0.40 0.46
    18 GFF5692 Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4) 0.35 0.46
    19 GFF436 LrgA-associated membrane protein LrgB 0.26 0.46
    20 GFF1610 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) no 0.46

    Or look for negative cofitness