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  • Top cofit genes for GFF2296 from Hydrogenophaga sp. GW460-11-11-14-LB1

    Transcriptional regulator, IclR family
    SEED: Transcriptional regulator, IclR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5458 FIG033889: YebC paralog in Betaproteobacteria no 0.65
    2 GFF1492 FIG00771309: hypothetical protein no 0.51
    3 GFF1655 hypothetical protein no 0.51
    4 GFF1171 hypothetical protein no 0.51
    5 GFF4016 PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV) no 0.50
    6 GFF4651 hypothetical protein no 0.49
    7 GFF3155 hypothetical protein no 0.48
    8 GFF2134 TcuB: works with TcuA to oxidize tricarballylate to cis-aconitate no 0.47
    9 GFF4595 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC) no 0.46
    10 GFF40 hypothetical protein no 0.46
    11 GFF394 transcriptional regulator, LuxR family no 0.46
    12 GFF186 hypothetical protein no 0.45
    13 GFF597 putative exported protein no 0.45
    14 GFF5658 Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007) no 0.45
    15 GFF936 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.45
    16 GFF1746 Beta-lactamase-like no 0.45
    17 GFF134 Permease of the drug/metabolite transporter (DMT) superfamily no 0.44
    18 GFF5 Transcriptional regulator, LysR family no 0.44
    19 GFF2445 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) no 0.44
    20 GFF2342 hypothetical protein no 0.43

    Or look for negative cofitness