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  • Top cofit genes for GFF2280 from Variovorax sp. SCN45

    ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate)
    SEED: Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
    KEGG: branched-chain amino acid transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1435 BUG/TctC family periplasmic protein no 0.55
    2 GFF78 Cytochrome c family protein no 0.50
    3 GFF6374 predicted 2-keto-3-deoxyxylonate dehydratase no 0.48
    4 GFF4117 Translation elongation factor Tu no 0.48
    5 GFF3330 Isohexenylglutaconyl-CoA hydratase (EC 4.2.1.57) no 0.48
    6 GFF5326 Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) no 0.48
    7 GFF606 BUG/TctC family periplasmic protein no 0.47
    8 GFF4100 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.47
    9 GFF6338 no description no 0.47
    10 GFF6801 Transcriptional regulator, GntR family no 0.46
    11 GFF6904 Zinc-type alcohol dehydrogenase-like protein no 0.45
    12 GFF3111 hypothetical protein no 0.45
    13 GFF4356 Alpha-methylacyl-CoA racemase (EC 5.1.99.4) no 0.45
    14 GFF1964 Histone acetyltransferase HPA2 and related acetyltransferases no 0.44
    15 GFF1952 Metallophosphoesterase no 0.44
    16 GFF6313 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.43
    17 GFF4719 hypothetical protein no 0.43
    18 GFF5006 Uncharacterized deacetylase no 0.42
    19 GFF3620 hypothetical protein no 0.42
    20 GFF906 Transcriptional regulator no 0.42

    Or look for negative cofitness