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Cofit
Protein
Homologs
Top cofit genes for GFF2254 from
Variovorax sp. SCN45
HYPOTHETICAL/UNKNOWN PROTEIN
SEED: HYPOTHETICAL/UNKNOWN PROTEIN
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF4844
Conjugative transfer protein TrbL
no
0.60
2
GFF6128
Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)
no
0.58
3
GFF4707
UDP-glucose 4-epimerase (EC 5.1.3.2)
no
0.52
4
GFF7059
Zinc uptake regulation protein Zur
no
0.49
5
GFF1546
Tripartite tricarboxylate transporter TctA family
no
0.49
6
GFF782
Alpha-ketoglutarate-dependent dioxygenase AlkB (EC 1.14.11.33)
no
0.48
7
GFF4774
Broad-specificity amino acid ABC transporter, ATP-binding protein 2
no
0.48
8
GFF6460
Sensor protein BasS/PmrB (activates BasR/PmrA)
no
0.46
9
GFF3065
hypothetical protein
no
0.46
10
GFF5482
Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system
no
0.45
11
GFF2089
CDP-alcohol phosphatidyltransferase family protein
no
0.45
12
GFF1644
hypothetical protein
no
0.44
13
GFF1427
Mandelate racemase (EC 5.1.2.2)
no
0.44
14
GFF2561
FIG00931134: hypothetical protein
no
0.44
15
GFF1733
Cell wall-associated hydrolases (invasion-associated proteins)
no
0.44
16
GFF1683
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
no
0.44
17
GFF3445
Cupin 2, conserved barrel
no
0.44
18
GFF1675
ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate)
no
0.44
19
GFF1516
TRAP-type C4-dicarboxylate transport system, large permease component
no
0.43
20
GFF371
RNA-binding protein YhbY
no
0.43
Or look for
negative cofitness